High Resolution, Differential, Near-infrared Transmission Spectroscopy of GJ 1214b

The nearby star GJ 1214 hosts a planet intermediate in radius and mass between Earth and Neptune, resulting in some uncertainty as to its nature. We have observed this planet, GJ 1214b, during transit with the high-resolution, near-infrared NIRSPEC spectrograph on the Keck II telescope, in order to characterize the planet's atmosphere. By cross-correlating the spectral changes through transit with a suite of theoretical atmosphere models, we search for variations associated with absorption in the planet atmosphere. Our observations are sufficient to rule out tested model atmospheres with wavelength-dependent transit depth variations >5e-4 over the wavelength range 2.1 - 2.4 micron. Our sensitivity is limited by variable slit loss and telluric transmission effects. We find no positive signatures but successfully rule out a number of plausible atmospheric models, including the default assumption of a gaseous, H-dominated atmosphere in chemical equilibrium. Such an atmosphere can be made consistent if the absorption due to methane is reduced. Clouds can also render such an atmosphere consistent with our observations, but only if they lie higher in the atmosphere than indicated by recent optical and infrared measurements. When taken in concert with constraints from other groups, our results support a consensus model in which the atmosphere of GJ 1214b contains significant H and He, but where methane is depleted. If this depletion is the result of photochemical processes, it may also produce a haze that suppresses spectral features in the optical.Comment: 32 pages, 15 figures, preprint, accepted to ApJ, responded to referee's comments. Comments welcom

Mapping transcription mechanisms from multimodal genomic data

Background Identification of expression quantitative trait loci (eQTLs) is an emerging area in genomic study. The task requires an integrated analysis of genome-wide single nucleotide polymorphism (SNP) data and gene expression data, raising a new computational challenge due to the tremendous size of data. Results We develop a method to identify eQTLs. The method represents eQTLs as information flux between genetic variants and transcripts. We use information theory to simultaneously interrogate SNP and gene expression data, resulting in a Transcriptional Information Map (TIM) which captures the network of transcriptional information that links genetic variations, gene expression and regulatory mechanisms. These maps are able to identify both cis- and trans- regulating eQTLs. The application on a dataset of leukemia patients identifies eQTLs in the regions of the GART, PCP4, DSCAM, and RIPK4 genes that regulate ADAMTS1, a known leukemia correlate. Conclusions The information theory approach presented in this paper is able to infer the dependence networks between SNPs and transcripts, which in turn can identify cis- and trans-eQTLs. The application of our method to the leukemia study explains how genetic variants and gene expression are linked to leukemia.National Human Genome Research Institute (U.S.) (R01HG003354)National Institute of Allergy and Infectious Diseases (U.S.) (U19 AI067854-05)National Heart, Lung, and Blood Institute (grant T32 HL007427-28)National Institutes of Health (U.S.) (grant K99 LM009826

Assessing the importance of car meanings and attitudes in consumer evaluations of electric vehicles

This paper reports findings from a research study which assesses the importance of attitudinal constructs related to general car attitudes and the meanings attached to car ownership over evaluations of electric vehicles (EVs). The data are assessed using principal component analysis to evaluate the structure of the underlying attitudinal constructs. The identified constructs are then entered into a hierarchical regression analysis which uses either positive or negative evaluations of the instrumental capabilities of EVs as the dependent variable. Results show that attitudinal constructs offer additional predictive power over socioeconomic characteristics and that the symbolic and emotive meanings of car ownership are as, if not more, effective in explaining the assessment of EV instrumental capability as compared to issues of cost and environmental concern. Additionally, the more important an individual considers their car to be in their everyday life, the more negative their evaluations are of EVs whilst individuals who claim to be knowledgeable about cars in general and EVs in particular have a lower propensity for negative EV attitudes. However, positive and negative EV attitudes are related to different attitudinal constructs suggesting that it is possible for someone to hold both negative and positive assessments at the same time

Do fish go with the flow? The effects of periodic and episodic flow pulses on 0+ fish biomass in a constrained lowland river

The hydrological regime is a significant driver of fish population dynamics in rivers, but there is a dearth of information regarding the mechanisms behind its effects on temperate species, especially non-salmonids. This study investigated the effects of periodic and episodic flow pulses on 0+ fish biomass in a constrained lowland river. De-seasonalized cross-correlation analysis was used to examine time-lagged correlations in episodic signals, in isolation of seasonal periodicity, to identify the responses and response timings of 0+ fish production to abiotic variables, and whether apparent “pulse-depletions” in biomass occur instantaneously (e.g., due to fish displacement during high pulses) or after a time lag. As anticipated, 0+ fish biomass was highest during periods of low discharge and high temperatures in summer, but cross-correlation analysis revealed a negative impact of high pulses on 0+ fish biomass with a lag of 7 months. There was no evidence for an instantaneous pulse-depletion effect of discharge on 0+ fish biomass, suggesting that the indirect effects of high pulses, such as habitat or food-web modifications, are more influential

Development of a photosynthesis model with an emphasis on ecological applications

A theoretical description of the simultaneous processes of photosynthesis and photorespiration in a single leaf is developed, based on the hypothesis that carbon dioxide and oxygen compete for the active site of ribulose diphosphate carboxylase. Michaelis-Menten kinetics and competitive inhibition at the end of a diffusion path provide the basic structure of the model. Data of Ludwig (1972) from sunflower are analyzed according to the formulation. This description is part of a more general physiological-ecological model of photosynthesis presented previously (Tenhunen et al., 1976a, b) and continues to elaborate sub-processes in terms of physiologically meaningful parameters. The description is considered a working hypothesis. Data on photorespiration from the literature are reviewed as they relate to this working hypothesis. Several lines of investigation are thereby suggested that will help clarify the role of photorespiration in whole leaf photosynthesis and determine the over-all utility of this modeling approach.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47718/1/442_2005_Article_BF01833627.pd

Independent component analysis of climate data: a new look at EOF rotation

The complexity inherent in climate data makes it necessary to introduce more than one statistical tool to the researcher to gain insight into the climate system. Empirical orthogonal function (EOF) analysis is one of the most widely used methods to analyze weather/climate modes of variability and to reduce the dimensionality of the system. Simple structure rotation of EOFs can enhance interpretability of the obtained patterns but cannot provide anything more than temporal uncorrelatedness. In this paper, an alternative rotation method based on independent component analysis (ICA) is considered. The ICA is viewed here as a method of EOF rotation. Starting from an initial EOF solution rather than rotating the loadings toward simplicity, ICA seeks a rotation matrix that maximizes the independence between the components in the time domain. If the underlying climate signals have an independent forcing, one can expect to find loadings with interpretable patterns whose time coefficients have properties that go beyond simple noncorrelation observed in EOFs. The methodology is presented and an application to monthly means sea level pressure (SLP) field is discussed. Among the rotated (to independence) EOFs, the North Atlantic Oscillation (NAO) pattern, an Arctic Oscillation–like pattern, and a Scandinavian-like pattern have been identified. There is the suggestion that the NAO is an intrinsic mode of variability independent of the Pacific